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Paper Reading

Community
jxtse
paper-reading

Reads and analyzes academic papers (arXiv preprints, conference / journal PDFs, Zotero items) at three configurable depths: quick skim (2 min), standard read (10 min), or deep analysis (30 min). Produces structured digests covering problem, method, key innovation, results, limitations, reproducibility, hidden assumptions, and connections to the user's other work. Use when the user shares an arXiv link, PDF, or paper title and asks to read / summarize / digest / TL;DR / analyze / review / critique / explain / break down a paper, asks about a paper's contributions / methods / results / equations / figures, wants to compare two papers side by side, or needs a reading note for their records.

Overview

Publisherjxtse
Repositoryscientific-research-skills
Skill namepaper-reading
Stars
76
Forks
6
Bundled files
Instructions only
LicenseMIT
Links
  • Markdown instructions

    A SKILL.md file the model loads on demand, so it only costs tokens when a request actually matches.

  • Works with any LLM

    AI skills are plain Markdown, not provider-specific code, so this works with GPT, Claude, Gemini, Grok, or a local model.

  • Self-contained

    Everything the model needs lives in the instructions — no extra files to sync.

  • Open source

    Published by jxtse on GitHub. Read the source before you install it.

Installation

Install the Paper Reading AI skill in TypingMind to use it with any LLM, or drop it into another agent that reads SKILL.md.

1

Install in TypingMind

TypingMind installs a skill straight from its GitHub folder — it reads SKILL.md, bundles the resource files, and stores the result locally.

  1. Open the app and go to Plugins → Skills.
  2. Choose "Install from GitHub".
  3. Paste the skill folder URL below and confirm.
    https://github.com/jxtse/scientific-research-skills/tree/main/skills/paper-reading
  4. Enable the skill in any chat where you want it available.
Plugins → Skills → Add skill → From GitHub URL, then paste the folder URL and press Continue.
2

Install in another agent

Any agent that reads the Agent Skills format can use this skill — copy the folder into that agent's skills directory.

Claude Code — .claude/skills
git clone --depth 1 https://github.com/jxtse/scientific-research-skills.git /tmp/scientific-research-skills
mkdir -p .claude/skills
cp -r /tmp/scientific-research-skills/skills/paper-reading .claude/skills/paper-reading
Restart Claude Code after copying so it picks up the new skill.

Use it in TypingMind

Enable Paper Reading in any TypingMind chat and the model takes it from there. Its name and description sit in the system prompt, and the moment a request matches, the model loads the full instructions itself — you never invoke it by hand, and it costs no tokens until it is actually used.

The model loads Paper Reading on its own as soon as a request matches it.

Works with any AI model

AI skills are plain Markdown instructions rather than provider-specific code, so Paper Reading is not tied to the model it was written for. Install it once in TypingMind and use it with GPT-5, Claude, Gemini, Grok, DeepSeek, Mistral, Llama, or a local model you run yourself — all on your own API keys.

  • Loaded only when it is needed

    The system prompt carries just the name and description. The instructions are fetched on the first matching request, so an idle skill costs nothing.

  • Switch models mid-chat

    Because the skill is instructions rather than code, changing model does not break it — the next model reads the same SKILL.md.

Skill instructions

This is the SKILL.md content the model loads. Read it before installing — a skill is instructions your model will follow.

Paper Reading

Structured workflow for reading academic papers efficiently.

When to Use

  • User shares an arXiv link or PDF and asks to read/summarize it
  • User asks about a specific paper's contributions, methods, or results
  • User wants a reading digest for their records
  • User asks to compare a paper against related work

Reading Levels

Level 1: Quick Skim (2 min)

When: User just wants to know if a paper is worth reading

Output:

  • Paper title, authors, venue, year
  • One-paragraph summary (what problem, what method, what result)
  • Key contribution in one sentence
  • Relevance assessment to user's work
  • Recommendation: Read / Skip / Skim only

Level 2: Standard Read (10 min)

When: User wants to understand the paper's approach

Output:

  • Problem: What gap does this address?
  • Method: How do they solve it? (with key technical details)
  • Key innovation: What's genuinely new vs. incremental?
  • Results: Main numbers + comparison to baselines
  • Limitations: What they don't do, acknowledged or not
  • Connections: How does this relate to user's active projects?

Level 3: Deep Analysis (30 min)

When: User is seriously considering building on this paper

Output:

  • Everything from Level 2, plus:
  • Detailed methodology: Step-by-step technical walkthrough
  • Reproducibility assessment: Can you implement this from the paper alone?
  • Experimental design critique: Are the baselines fair? Metrics appropriate?
  • Hidden assumptions: What are they not saying?
  • Extension opportunities: How could this be improved or adapted?
  • Key equations/algorithms: Extracted and explained
  • Figure analysis: What do the key figures actually show?

Workflow

Step 1: Obtain Paper

arXiv link → Download PDF, extract text
PDF file → Extract text directly
Paper title → Search Semantic Scholar → get arXiv link → download
Zotero item → Get from local library

Step 2: Read at Requested Level

Follow the appropriate level template above. When in doubt, start with Level 2.

Step 3: Store Digest

After reading, save the digest:

  1. Store structured summary to local dashboard
  2. If user confirms, add/update Zotero entry with notes

Step 4: Connect to Context

  • Link to user's active projects if relevant
  • Suggest follow-up papers (from references or "cited by")
  • Note if this paper supports or contradicts prior reads

Reading Heuristics

For ML/AI papers:

  • Jump to Table 1 (main results) first — if the numbers aren't impressive, calibrate expectations
  • Check the ablation study — it reveals what actually matters in their method
  • Read the limitations/future work section — often more honest than the intro
  • Look at Appendix — important details are often buried there

For methods papers:

  • Focus on Figure 1 (method overview) + Section 3 (method) + Table 1 (results)
  • Skip related work on first pass — come back only if you need positioning context

For empirical papers:

  • Focus on experimental setup, metrics, and statistical significance
  • Check if baselines are fairly implemented (same hyperparameter search budget?)
  • Look for cherry-picked examples in qualitative analysis

Paper Comparison Mode

When user asks to compare two papers:

| Aspect       | Paper A          | Paper B          |
|--------------|------------------|------------------|
| Problem      |                  |                  |
| Method       |                  |                  |
| Data         |                  |                  |
| Key metric   |                  |                  |
| Advantage    |                  |                  |
| Limitation   |                  |                  |

Frequently asked questions

What does the Paper Reading AI skill do?

Reads and analyzes academic papers (arXiv preprints, conference / journal PDFs, Zotero items) at three configurable depths: quick skim (2 min), standard read (10 min), or deep analysis (30 min). Produces structured digests covering problem, method, key innovation, results, limitations, reproducibility, hidden assumptions, and connections to the user's other work. Use when the user shares an arXiv link, PDF, or paper title and asks to read / summarize / digest / TL;DR / analyze / review / critique / explain / break down a paper, asks about a paper's contributions / methods / results / equati...

Why use Paper Reading on TypingMind?

Because you install it once and use it with any model. Paper Reading is plain Markdown rather than provider-specific code, so the same skill runs on GPT-5, Claude, Gemini, Grok, or a local model — and you can switch model mid-chat without it breaking. TypingMind runs on your own API keys, so you pay providers directly instead of a per-seat subscription, and your skills and chats stay in your own storage.

How do I install Paper Reading in TypingMind?

Open Plugins → Skills → Install from GitHub in TypingMind and paste https://github.com/jxtse/scientific-research-skills/tree/main/skills/paper-reading. TypingMind reads its SKILL.md and installs it as a skill you can enable per chat.

Which AI models can use Paper Reading?

Any model you connect in TypingMind. AI skills are plain Markdown instructions rather than provider-specific code, so GPT, Claude, Gemini, Grok, and local models can all load this skill when a request matches it.

How many AI models can I use with Paper Reading?

As many as you like. As long as a model supports skills, you can use Paper Reading with it — GPT, Claude, Gemini, Grok, DeepSeek, Mistral, Llama and more — all on TypingMind with your own API keys.

Is the Paper Reading AI skill free?

Yes. It is published on GitHub by jxtse under the MIT license. You only pay your own AI provider for the tokens you use.

What are AI skills?

An AI skill is a reusable instruction bundle that teaches an AI model how to do one specific task. It follows the open Agent Skills format: a SKILL.md file with a name and description, plus any scripts, templates or reference files the model may need. The model reads the instructions only when your request matches the skill, so an installed skill costs nothing until it is used.

How are AI skills different from plugins or MCP servers?

A plugin or MCP server gives a model new tools to call — code that runs somewhere and returns a result. An AI skill gives the model knowledge and process instead: how to approach a task, which steps to follow, what good output looks like. Skills are plain Markdown, so they need no server, no API key and no runtime, and they work with any model.

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