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Thinking Scientific Method

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tjboudreaux
thinking-scientific-method

When a symptom has several plausible causes, rank falsifiable hypotheses and run the cheapest discriminating observation first; prefer least-assumptive survivors only after evidence fit.

Overview

Publishertjboudreaux
Repositorycc-thinking-skills
Skill namethinking-scientific-method
Stars
1.3K
Forks
158
Bundled files
Instructions only
LicenseMIT
Links
  • Markdown instructions

    A SKILL.md file the model loads on demand, so it only costs tokens when a request actually matches.

  • Works with any LLM

    AI skills are plain Markdown, not provider-specific code, so this works with GPT, Claude, Gemini, Grok, or a local model.

  • Self-contained

    Everything the model needs lives in the instructions — no extra files to sync.

  • Open source

    Published by tjboudreaux on GitHub. Read the source before you install it.

Installation

Install the Thinking Scientific Method AI skill in TypingMind to use it with any LLM, or drop it into another agent that reads SKILL.md.

1

Install in TypingMind

TypingMind installs a skill straight from its GitHub folder — it reads SKILL.md, bundles the resource files, and stores the result locally.

  1. Open the app and go to Plugins → Skills.
  2. Choose "Install from GitHub".
  3. Paste the skill folder URL below and confirm.
  4. Enable the skill in any chat where you want it available.
Plugins → Skills → Add skill → From GitHub URL, then paste the folder URL and press Continue.
2

Install in another agent

Any agent that reads the Agent Skills format can use this skill — copy the folder into that agent's skills directory.

Claude Code — .claude/skills
git clone --depth 1 https://github.com/tjboudreaux/cc-thinking-skills.git /tmp/cc-thinking-skills
mkdir -p .claude/skills
cp -r /tmp/cc-thinking-skills/skills/thinking-scientific-method .claude/skills/thinking-scientific-method
Restart Claude Code after copying so it picks up the new skill.

Use it in TypingMind

Enable Thinking Scientific Method in any TypingMind chat and the model takes it from there. Its name and description sit in the system prompt, and the moment a request matches, the model loads the full instructions itself — you never invoke it by hand, and it costs no tokens until it is actually used.

The model loads Thinking Scientific Method on its own as soon as a request matches it.

Works with any AI model

AI skills are plain Markdown instructions rather than provider-specific code, so Thinking Scientific Method is not tied to the model it was written for. Install it once in TypingMind and use it with GPT-5, Claude, Gemini, Grok, DeepSeek, Mistral, Llama, or a local model you run yourself — all on your own API keys.

  • Loaded only when it is needed

    The system prompt carries just the name and description. The instructions are fetched on the first matching request, so an idle skill costs nothing.

  • Switch models mid-chat

    Because the skill is instructions rather than code, changing model does not break it — the next model reads the same SKILL.md.

Skill instructions

This is the SKILL.md content the model loads. Read it before installing — a skill is instructions your model will follow.

Scientific Method (Hypothesis Differential)

When a symptom could come from several places, enumerate competing falsifiable hypotheses and spend the cheapest observation on the one that best discriminates among them. After each observation, keep only hypotheses that still fit, then prefer the survivor with the fewest unsupported assumptions as the working explanation.

When to Use

  • A bug, incident, or anomaly has more than one plausible cause.
  • You can observe code, logs, diffs, traces, tests, configs, or data now.
  • You must localize the faulty file, function, branch, config, or invariant before fixing.
  • Competing explanations fit the same surface facts and you need a discriminating check.

When NOT to Use

  • Cause is already obvious from a single stack, failing test, or recent diff — fix directly.
  • Only one plausible hypothesis exists — test it; do not invent rivals for ritual.
  • No observation is possible yet — obtain access first; do not speculate a localization.
  • Multi-week experiments, product A/B tests, or policy trials — this skill is for agent-now checks.
  • Fault is already localized and you need systemic root/prevention depth — use five-whys-plus.
  • Selective "only these objects/times" defects better suited to IS/IS-NOT comparison — use Kepner-Tregoe.
  • Representation (doc/dashboard) may be stale versus reality — verify territory with map-territory first, then resume hypotheses.

Procedure

  1. State the symptom precisely. Capture failing behavior, scope, timing, environment, and constraints. Separate observation from interpretation.
  2. Enumerate 2–5 competing hypotheses. Name specific files, functions, configs, input conditions, or invariants. Reject vague buckets ("backend issue"). If no serious alternative remains after a deliberate check, exit this differential and test or fix the sole evidenced cause directly; never fabricate a rival to continue the procedure.
  3. Name falsifiers and cheap observations before looking. For each hypothesis: what result drops it, and what read/grep/diff/log/test check can you run now. Prefer observations available immediately over deploys, canaries, or long waits.
  4. Rank observations by discrimination × cheapness. Run the cheapest check that best separates the top contenders. Do not deep-dive the favorite first if a cheap cross-check would kill alternatives.
  5. Update after each observation. Drop falsified hypotheses. Among survivors that still fit all evidence, prefer the one with the fewest independent unsupported assumptions (extra components, rare timing, external dependencies). Parsimony ranks survivors after fit; it never rescues a leaner hypothesis that evidence already contradicts. Escalate complexity only when simpler survivors are ruled out.
  6. Localize and stop. When one hypothesis has direct supporting evidence and key alternatives are ruled out, name the file/function/config to change and the evidence that localizes it. Stop analyzing once localization is direct.

Output

text
Symptom: <specific failing behavior, scope, timing>
Hypotheses:
  H1: <specific cause> | Why plausible | Observation | Falsified if
  H2: ...
  H3: ...
Test order: <cheapest discriminating checks>
Results: <what each observation showed>
Survivors: <remaining Hs; least-assumptive working pick among fit>
Localized fault: <file/function/config + supporting evidence>
Ruled out: <Hs dropped and why>

Verification

  • Falsify the differential conclusion if you continued with fewer than two serious hypotheses, if no pre-stated falsifier existed, if a cheaper discriminating check was skipped, or if a "simpler" story was kept after evidence contradicted it.
  • Stop when the fault is directly localized and alternatives that matter are ruled out; do not continue theorizing.
  • Over-application guard: do not narrate observe→question without competing causes; do not treat fewest assumptions as proof; do not run this skill when a single obvious cause is already evidenced.

Frequently asked questions

What does the Thinking Scientific Method AI skill do?

When a symptom has several plausible causes, rank falsifiable hypotheses and run the cheapest discriminating observation first; prefer least-assumptive survivors only after evidence fit.

Why use Thinking Scientific Method on TypingMind?

Because you install it once and use it with any model. Thinking Scientific Method is plain Markdown rather than provider-specific code, so the same skill runs on GPT-5, Claude, Gemini, Grok, or a local model — and you can switch model mid-chat without it breaking. TypingMind runs on your own API keys, so you pay providers directly instead of a per-seat subscription, and your skills and chats stay in your own storage.

How do I install Thinking Scientific Method in TypingMind?

Open Plugins → Skills → Install from GitHub in TypingMind and paste https://github.com/tjboudreaux/cc-thinking-skills/tree/main/skills/thinking-scientific-method. TypingMind reads its SKILL.md and installs it as a skill you can enable per chat.

Which AI models can use Thinking Scientific Method?

Any model you connect in TypingMind. AI skills are plain Markdown instructions rather than provider-specific code, so GPT, Claude, Gemini, Grok, and local models can all load this skill when a request matches it.

How many AI models can I use with Thinking Scientific Method?

As many as you like. As long as a model supports skills, you can use Thinking Scientific Method with it — GPT, Claude, Gemini, Grok, DeepSeek, Mistral, Llama and more — all on TypingMind with your own API keys.

Is the Thinking Scientific Method AI skill free?

Yes. It is published on GitHub by tjboudreaux under the MIT license. You only pay your own AI provider for the tokens you use.

What are AI skills?

An AI skill is a reusable instruction bundle that teaches an AI model how to do one specific task. It follows the open Agent Skills format: a SKILL.md file with a name and description, plus any scripts, templates or reference files the model may need. The model reads the instructions only when your request matches the skill, so an installed skill costs nothing until it is used.

How are AI skills different from plugins or MCP servers?

A plugin or MCP server gives a model new tools to call — code that runs somewhere and returns a result. An AI skill gives the model knowledge and process instead: how to approach a task, which steps to follow, what good output looks like. Skills are plain Markdown, so they need no server, no API key and no runtime, and they work with any model.

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