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Nature Literature Pipeline

CommunityPopular
Yuan1z0825
nature-literature-pipeline

Complete automated literature discovery pipeline: multi-source search → six-dimension scoring → fine reading → formatted delivery → archival. Combines a configurable engine with daily cron-driven application layer. Works with Feishu, Telegram, or any messaging platform.

Overview

PublisherYuan1z0825
Repositorynature-skills
Skill namenature-literature-pipeline
Stars
42.8K
Forks
2.3K
Bundled files
10
LicenseMIT
Links
  • Markdown instructions

    A SKILL.md file the model loads on demand, so it only costs tokens when a request actually matches.

  • Works with any LLM

    AI skills are plain Markdown, not provider-specific code, so this works with GPT, Claude, Gemini, Grok, or a local model.

  • 10 bundled files

    Scripts, templates, and references the model can read while it works. Files are read-only and never executed.

  • Open source

    Published by Yuan1z0825 on GitHub. Read the source before you install it.

Installation

Install the Nature Literature Pipeline AI skill in TypingMind to use it with any LLM, or drop it into another agent that reads SKILL.md.

1

Install in TypingMind

TypingMind installs a skill straight from its GitHub folder — it reads SKILL.md, bundles the resource files, and stores the result locally.

  1. Open the app and go to Plugins → Skills.
  2. Choose "Install from GitHub".
  3. Paste the skill folder URL below and confirm.
  4. Enable the skill in any chat where you want it available.
Plugins → Skills → Add skill → From GitHub URL, then paste the folder URL and press Continue.
2

Install in another agent

Any agent that reads the Agent Skills format can use this skill — copy the folder into that agent's skills directory.

Claude Code — .claude/skills
git clone --depth 1 https://github.com/Yuan1z0825/nature-skills.git /tmp/nature-skills
mkdir -p .claude/skills
cp -r /tmp/nature-skills/skills/nature-literature-pipeline .claude/skills/nature-literature-pipeline
Restart Claude Code after copying so it picks up the new skill.

Use it in TypingMind

Enable Nature Literature Pipeline in any TypingMind chat and the model takes it from there. Its name and description sit in the system prompt, and the moment a request matches, the model loads the full instructions itself — you never invoke it by hand, and it costs no tokens until it is actually used.

The model loads Nature Literature Pipeline on its own as soon as a request matches it.

Works with any AI model

AI skills are plain Markdown instructions rather than provider-specific code, so Nature Literature Pipeline is not tied to the model it was written for. Install it once in TypingMind and use it with GPT-5, Claude, Gemini, Grok, DeepSeek, Mistral, Llama, or a local model you run yourself — all on your own API keys.

  • Loaded only when it is needed

    The system prompt carries just the name and description. The instructions are fetched on the first matching request, so an idle skill costs nothing.

  • Switch models mid-chat

    Because the skill is instructions rather than code, changing model does not break it — the next model reads the same SKILL.md.

Skill instructions

This is the SKILL.md content the model loads. Read it before installing — a skill is instructions your model will follow.

Nature Literature Pipeline

A complete, production-tested automated literature pipeline. Not just "search for papers" — it's a structured engine that scores, classifies, reads, delivers, and archives research papers daily.

What It Does

Cron (daily trigger, e.g. 08:30)
  ├─ ① SEARCH (30 candidates)
  │   arXiv / OpenAlex / Crossref / Semantic Scholar (auto-degradation)
  ├─ ② COARSE FILTER (30 → 5)
  │   Six-dimension scoring: topic match × 35 + methodology × 20
  │   + journal quality × 15 + network relevance × 10
  │   + applied value × 10 + archival value × 10
  ├─ ③ FINE READ (top 5)
  │   Abstract-level or full-text. Source level tagged:
  │   Full-text / Abstract only / Metadata only
  ├─ ④ DELIVER
  │   Formatted digest to Feishu/Telegram/etc.
  │   🏅 rank | title | journal | ⭐ score | 💡 one-liner
  │   🔬 methods | 📊 key results | 🧭 commentary
  └─ ⑤ ARCHIVE
      DOI/arXiv de-dup → classify → write notes → update index

Quick Start

After installing, tell your agent:

My research area is [X], keywords: [Y], deliver to [feishu group name], archive to [path]

The agent will configure keywords, delivery target, and archive path automatically.

Then set up a daily cron job:

Set up a daily literature push at 08:30 Beijing time, 30 candidates, top 5 delivered

Architecture

The skill is organized in two layers:

LayerPurposeFiles
EngineScoring, classification, note templates, gap analysisreferences/scoring-system.md, references/gap-analysis.md, references/note-template.md
ApplicationDaily cron pipeline, delivery formatting, archival workflowreferences/push-format.md, references/cron-setup.md, references/review-compilation-workflow.md

Configuration

All domain-specific content is configurable:

  • Keywords — your research keywords (English + Chinese)
  • Scoring weights — adjust the six dimensions for your field
  • Classification rules — define your own tier system (A-E or custom)
  • Delivery target — Feishu group, Telegram channel, email, etc.
  • Archive path — local vault/wiki directory

A config template is provided in templates/literature-push-template.md.

Built-in Safeguards

  • Score validation: Each dimension capped, total recalculated — no 11/10 allowed
  • Triple de-duplication: DOI / arXiv ID / OpenAlex ID
  • Graceful degradation: Semantic Scholar down → auto-switch to OpenAlex + Crossref + arXiv
  • Read-only archive: Daily pipeline writes to raw/ literature directory only; never modifies wiki/knowledge base without user approval

Related Skills

  • nature-academic-search — ad-hoc literature search (complementary; this skill adds structured daily automation)
  • nature-citation — CNS citation export (for importing pipeline discoveries into manuscripts)
  • zotero — library management (for long-term organization of pipeline outputs)
  • arxiv — arXiv API (used as a search source)

References

ReferencePurpose
references/scoring-system.mdSix-dimension scoring rubric with weights, caps, and evaluation logic
references/gap-analysis.mdMethodology for identifying research gaps through systematic literature survey
references/note-template.mdStandardized literature note format with YAML frontmatter
references/push-format.mdDaily digest message template with field guidelines and example
references/cron-setup.mdCron job creation, verification, and manual fallback procedures
references/review-compilation-workflow.mdEnd-to-end workflow for concentrated literature review writing

Pitfalls

  1. Keyword drift: Review keywords monthly — research directions evolve
  2. Score inflation: Subagents may inflate scores; always validate arithmetic
  3. Duplicate creep: Classic papers will reappear; maintain a dedup index
  4. Wiki safety: Pipeline writes to raw/ only; wiki integration is manual
  5. Cron locality: Hermes cron is local, not cloud — machine must be running

Bundled files

The model reads these on demand while the skill is loaded. They are exposed as readable files and are never executed.

Frequently asked questions

What does the Nature Literature Pipeline AI skill do?

Complete automated literature discovery pipeline: multi-source search → six-dimension scoring → fine reading → formatted delivery → archival. Combines a configurable engine with daily cron-driven application layer. Works with Feishu, Telegram, or any messaging platform.

Why use Nature Literature Pipeline on TypingMind?

Because you install it once and use it with any model. Nature Literature Pipeline is plain Markdown rather than provider-specific code, so the same skill runs on GPT-5, Claude, Gemini, Grok, or a local model — and you can switch model mid-chat without it breaking. TypingMind runs on your own API keys, so you pay providers directly instead of a per-seat subscription, and your skills and chats stay in your own storage.

How do I install Nature Literature Pipeline in TypingMind?

Open Plugins → Skills → Install from GitHub in TypingMind and paste https://github.com/Yuan1z0825/nature-skills/tree/main/skills/nature-literature-pipeline. TypingMind reads its SKILL.md and bundles its files and installs it as a skill you can enable per chat.

Which AI models can use Nature Literature Pipeline?

Any model you connect in TypingMind. AI skills are plain Markdown instructions rather than provider-specific code, so GPT, Claude, Gemini, Grok, and local models can all load this skill when a request matches it.

How many AI models can I use with Nature Literature Pipeline?

As many as you like. As long as a model supports skills, you can use Nature Literature Pipeline with it — GPT, Claude, Gemini, Grok, DeepSeek, Mistral, Llama and more — all on TypingMind with your own API keys.

Is the Nature Literature Pipeline AI skill free?

Yes. It is published on GitHub by Yuan1z0825 under the MIT license. You only pay your own AI provider for the tokens you use.

What are AI skills?

An AI skill is a reusable instruction bundle that teaches an AI model how to do one specific task. It follows the open Agent Skills format: a SKILL.md file with a name and description, plus any scripts, templates or reference files the model may need. The model reads the instructions only when your request matches the skill, so an installed skill costs nothing until it is used.

How are AI skills different from plugins or MCP servers?

A plugin or MCP server gives a model new tools to call — code that runs somewhere and returns a result. An AI skill gives the model knowledge and process instead: how to approach a task, which steps to follow, what good output looks like. Skills are plain Markdown, so they need no server, no API key and no runtime, and they work with any model.

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